Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Bisulfite alignment and QC

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/bisulfite.cwl

Branch/Commit ID: 72e0bdc1ec449d86df4534132e9a30ad7e9b8afd
workflow graph Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)

https://github.com/ncbi/pgap.git

Path: bacterial_annot/wf_bacterial_annot_pass3.cwl

Branch/Commit ID: ac387721a55fd91df3dcdf16e199354618b136d1
workflow graph sum-wf-noET.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/sum-wf-noET.cwl

Branch/Commit ID: 5e3fac092a720c5670ae3e787eabe1aaade71d83
workflow graph mutect parallel workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/mutect.cwl

Branch/Commit ID: db0a91eb094d0a7c58042d4264986ea042dd4827
workflow graph chipseq-pe.cwl

Runs ChIP-Seq BioWardrobe basic analysis with paired-end input data files.

https://github.com/Barski-lab/workflows.git

Path: workflows/chipseq-pe.cwl

Branch/Commit ID: 5a92b026bd62fe1597de940088e8adeef6939d5a
workflow graph workflow_input_sf_expr_v1_1.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/workflow_input_sf_expr_v1_1.cwl

Branch/Commit ID: 141048ae4b78aa765782bb752be4a1550edc2eea
workflow graph mpi_simple_wf.cwl

Simple 2 step workflow to check that workflow steps are independently picking up on the number of processes. First run the parallel get PIDs step (on the input num procs) then run (on a single proc) the line count. This should equal the input.

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mpi_simple_wf.cwl

Branch/Commit ID: ca7f7687b39611c295dc9d21c542214f2b462093
workflow graph count-lines7-single-source-wf_v1_0.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/count-lines7-single-source-wf_v1_0.cwl

Branch/Commit ID: 139c64b55f7693d22e6646b8afe585f90da11dcb
workflow graph Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/pvacseq.cwl

Branch/Commit ID: 37a3622d1d03812e4f868b5024c52607696bfb75
workflow graph WES Preprocessing

Whole Exome Sequence analysis Preprocessing

https://github.com/Duke-GCB/bespin-cwl.git

Path: workflows/exomeseq-preprocessing.cwl

Branch/Commit ID: 3318d9fcfd153ad3e9744d5e495d9c39aee20916