Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Single-cell Reference Indices
Single-cell Reference Indices Builds a Cell Ranger and Cell Ranger ARC compatible reference folders from the custom genome FASTA and gene GTF annotation files |
https://github.com/Barski-lab/sc-seq-analysis.git
Path: workflows/sc-ref-indices-wf.cwl Branch/Commit ID: main |
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wf-variantcall.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: somatic-lowfreq/pisces-titr-workflow/wf-variantcall.cwl Branch/Commit ID: master |
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sc_atac_seq_initial_analysis.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/sc_atac_seq_initial_analysis.cwl Branch/Commit ID: 3da5dd0 |
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WGS QC workflow nonhuman
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_wgs_nonhuman.cwl Branch/Commit ID: master |
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maf2vcf_gz_workflow.cwl
Workflow to convert a maf file into a vcf.gz with .tbi index |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/maf2vcf_gz_workflow.cwl Branch/Commit ID: master |
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wf_amr_dna.cwl
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https://github.com/ncbi/pipelines.git
Path: amr_finder/wf_amr_dna.cwl Branch/Commit ID: master |
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exomeseq-gatk4-02-variantdiscovery.cwl
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https://github.com/Duke-GCB/bespin-cwl.git
Path: subworkflows/exomeseq-gatk4-02-variantdiscovery.cwl Branch/Commit ID: master |
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dedup-3-pass-distr.cwl
run 3-pass dedup: algo LocusCollector + algo Dedup output_dup_read_name + algo Dedup dedup_by_read_name sequentially in distributed mode |
https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/dedup-3-pass-distr.cwl Branch/Commit ID: master |
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fastqSE2bam.multisamples.cwl
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https://github.com/ddbj/human-reseq.git
Path: Workflows/fastqSE2bam.multisamples.cwl Branch/Commit ID: master |
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io-file-default-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/io-file-default-wf.cwl Branch/Commit ID: master |
