Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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WGS QC workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: qc/workflow_wgs.cwl Branch/Commit ID: toil_compatibility |
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wf-variantcall.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: NA12878-chr20/NA12878-platinum-chr20-workflow-arvados/wf-variantcall.cwl Branch/Commit ID: master |
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umi per-lane alignment subworkflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: master |
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viralrecon.nanopore.packed.cwl#viralrecon.nanopore.single.cwl
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https://github.com/inutano/viralrecon-cwl.git
Path: nanopore/workflow/viralrecon.nanopore.packed.cwl Branch/Commit ID: development Packed ID: viralrecon.nanopore.single.cwl |
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bwa_mem
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_mem.cwl Branch/Commit ID: 1.0.6 |
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Exome QC workflow
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: No_filters_detect_variants |
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05-quantification.cwl
ChIP-seq - Quantification - samples: treatment |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/05-quantification.cwl Branch/Commit ID: master |
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wf_fastqc.cwl
This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol) |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_fastqc.cwl Branch/Commit ID: master |
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snapanalysis_setup_and_analyze.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/snapanalysis_setup_and_analyze.cwl Branch/Commit ID: 302f1f3 |
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test_workflow.cwl
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https://github.com/mightqxc/panda-atm.git
Path: test_workflow.cwl Branch/Commit ID: master |
