Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
animal-genome-assembly.with_canu.cwl
Animal Genome Assembly pipeline by Kazuharu Arakawa (@gaou_ak), CWLized by Tazro Ohta (@inutano). This workflow contains assembly step by canu which may take a few weeks to complete. Be careful to run! |
https://github.com/pitagora-network/DAT2-cwl.git
Path: workflow/animal-genome-assembly/animal-genome-assembly.with_canu.cwl Branch/Commit ID: main |
|
|
|
cnv_exomedepth
CNV ExomeDepth calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_exome_depth.cwl Branch/Commit ID: 1.0.6 |
|
|
|
bqsr-distr.cwl
|
https://github.com/sentieon/sentieon-cwl.git
Path: stage/bqsr-distr.cwl Branch/Commit ID: master |
|
|
|
count-lines11-extra-step-wf-noET.cwl
|
https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines11-extra-step-wf-noET.cwl Branch/Commit ID: master |
|
|
|
Tumor-Only Detect Variants workflow
|
https://github.com/genome/cancer-genomics-workflow.git
Path: detect_variants/tumor_only_detect_variants.cwl Branch/Commit ID: toil_compatibility |
|
|
|
protein_evidence_mapping.cwl
|
https://github.com/pvanheus/lukasa.git
Path: protein_evidence_mapping.cwl Branch/Commit ID: main |
|
|
|
qiime2 importing data
Obtaining and importing data from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/bespin-workflows/16s-qiime2.git
Path: subworkflows/qiime2-01-import-data-single.cwl Branch/Commit ID: develop |
|
|
|
wf_paleocar_models.cwl
|
https://github.com/idaks/cwl_modeling.git
Path: yw_cwl_modeling/yw2cwl_parser/example_sql/paleocar_models/wf_paleocar_models.cwl Branch/Commit ID: master |
|
|
|
collate_unique_SSU_headers.cwl
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 3b602cb |
|
|
|
WES GATK4 Preprocessing
Whole Exome Sequence analysis GATK4 Preprocessing |
https://github.com/Duke-GCB/bespin-cwl.git
Path: workflows/exomeseq-gatk4-preprocessing.cwl Branch/Commit ID: master |
