Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 509938802c5e42bb8084c6a5a26ab6425c60e69a
	extract_gencoll_ids	https://github.com/ncbi/pgap.git Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: af78bfbc7625a817a2875e87c8ee267cf46b8c57
	workflow.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: flow_dispatch/workflow.cwl Branch/Commit ID: 0b58c250e8ab7c5efae29443f08ea74316127041
	Apply filters to VCF file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/filter_vcf_nonhuman.cwl Branch/Commit ID: b9e7392e72506cadd898a6ac4db330baf6535ab6
	Whole genome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_wgs.cwl Branch/Commit ID: 74647cc0f1abac4ee22950cfa89c44cf2ca3cffd
	freebayes.cwl	https://github.com/uc-cdis/genomel_pipelines.git Path: genomel/cwl/workflows/variant_calling/freebayes.cwl Branch/Commit ID: c661469505c606e1353f23c21a6654724a9d8d63
	taxonomy_check_16S	https://github.com/ncbi/pgap.git Path: task_types/tt_taxonomy_check_16S.cwl Branch/Commit ID: f2bd4687f06f85ea848b6f1ce04ec97f48525334
	wf_input_norm_and_entropy.cwl This workflow normalizes clip aligned reads against a size-matched input sample. Then, an entropy score is calculated for each peak found.	https://github.com/YeoLab/merge_peaks.git Path: cwl/wf_input_norm_and_entropy.cwl Branch/Commit ID: aedc0a14d4ba109ee65678a3201a52c5bb6ad473
	kmer_cache_store	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: af78bfbc7625a817a2875e87c8ee267cf46b8c57
	04-quantification-se-unstranded.cwl RNA-seq 04 quantification	https://github.com/Duke-GCB/GGR-cwl.git Path: v1.0/RNA-seq_pipeline/04-quantification-se-unstranded.cwl Branch/Commit ID: 487af88ef0b971f76ecd1a215639bb47e3ee94e1