Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	foreign_screening.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/foreign_screening.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747
	msi_workflow.cwl Workflow to run the MSI analysis on a batch of samples and merge the results back into a single data clinical file	https://github.com/mskcc/pluto-cwl.git Path: cwl/msi_workflow.cwl Branch/Commit ID: ba3ff09328cc646d7254b2d2ee0fbe1abca3d4ad
	bulk_analysis.cwl	https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git Path: steps/bulk_analysis.cwl Branch/Commit ID: 97586613d396c4389d013cc46e37fc7aa5974f28
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f
	tmb.cwl Workflow for calculating TMB tumor mutational burden on a single sample	https://github.com/mskcc/pluto-cwl.git Path: cwl/tmb.cwl Branch/Commit ID: ba3ff09328cc646d7254b2d2ee0fbe1abca3d4ad
	VIRTUS.PE.singlevirus.cwl	https://github.com/yyoshiaki/VIRTUS.git Path: workflow/VIRTUS.PE.singlevirus.cwl Branch/Commit ID: 16dbe9d99137cbfee834fc22b79190f812543f7e
	Running cellranger count and lineage inference	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f
	heatmap-prepare.cwl Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order.	https://github.com/datirium/workflows.git Path: tools/heatmap-prepare.cwl Branch/Commit ID: 9e3c3e65c19873cd1ed3cf7cc3b94ebc75ae0cc5
	facets-suite-workflow.cwl Workflow for running the facets suite workflow on a single tumor normal pair Includes handling of errors in case execution fails for the sample pair	https://github.com/mskcc/pluto-cwl.git Path: cwl/facets-suite-workflow.cwl Branch/Commit ID: ba3ff09328cc646d7254b2d2ee0fbe1abca3d4ad
	concat.cwl	https://github.com/mskcc/pluto-cwl.git Path: cwl/concat.cwl Branch/Commit ID: ba3ff09328cc646d7254b2d2ee0fbe1abca3d4ad