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Graph Name Retrieved From View
workflow graph Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl

Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence.

https://github.com/mr-c/2020-covid-19-bh-viz.git

Path: Ambarish_Kumar_SOP/Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl

Branch/Commit ID: 2c47ee8b02219cf9959f7ad5e4cf2e6d6f5b0601
workflow graph 02-trim-pe.cwl

ATAC-seq 02 trimming - reads: PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/02-trim-pe.cwl

Branch/Commit ID: 6e008c1170ef818b6c4c63f0eec7baa4f7be7b3c
workflow graph SSU-from-tablehits.cwl

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: ca6ca613f0d3728d9589a6ca6293e66dfde87bfb
workflow graph exome alignment and somatic variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome_mouse.cwl

Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e
workflow graph 04-quantification-pe-unstranded.cwl

RNA-seq 04 quantification

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-pe-unstranded.cwl

Branch/Commit ID: 6e008c1170ef818b6c4c63f0eec7baa4f7be7b3c
workflow graph 04-quantification-se-unstranded.cwl

RNA-seq 04 quantification

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-se-unstranded.cwl

Branch/Commit ID: 6e008c1170ef818b6c4c63f0eec7baa4f7be7b3c
workflow graph if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/toolkit/if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl

Branch/Commit ID: eed00bbabeae73ef7f00712da17861eade3b9057
workflow graph alignment for mouse with qc

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_wgs_mouse.cwl

Branch/Commit ID: 3bb0693076adc1543079a6b136c74906ad546ac6
workflow graph basename-fields-test.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/basename-fields-test.cwl

Branch/Commit ID: ca8e6661b5cab1f017e5bc4024650722dae4d50b
workflow graph Detect Variants workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/detect_variants.cwl

Branch/Commit ID: 3f3b186da9bf82a5e2ae74ba27aef35a46174ebe