Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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downsample unaligned BAM and align
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: 2e298960837739717ec2928a99c5d811183012e6 |
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exome alignment and germline variant detection, with optitype for HLA typing
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: 2e0562a5c3cd7aac24af4c622a5ae68a7fb23a71 |
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align_sort_sa
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: 33dcc054a8718edad26440f085d73b7c5d7b7871 |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: 2e0562a5c3cd7aac24af4c622a5ae68a7fb23a71 |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: a08de598edc04f340fdbff76c9a92336a7702022 |
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Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: 2e0562a5c3cd7aac24af4c622a5ae68a7fb23a71 |
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gather AML trio outputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/aml_trio_cle_gathered.cwl Branch/Commit ID: 2e0562a5c3cd7aac24af4c622a5ae68a7fb23a71 |
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1st-workflow.cwl
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https://github.com/common-workflow-language/user_guide.git
Path: _includes/cwl/22-nested-workflows/1st-workflow.cwl Branch/Commit ID: 3a59e37dc3de19dbbb9b39015f30c459f667ae12 |
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nestedworkflows.cwl
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https://github.com/common-workflow-language/user_guide.git
Path: _includes/cwl/22-nested-workflows/nestedworkflows.cwl Branch/Commit ID: 3a59e37dc3de19dbbb9b39015f30c459f667ae12 |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: ecac0fda44df3a8f25ddfbb3e7a023fcbe4cbd0f |
