Explore Workflows

This workflow will perform OxoG filtering on a set of VCFs. It will produce VCFs and their associated index files.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: pcawg_oxog_wf.cwl

Branch/Commit ID: 123a3151d35f98e442e703d903dc3e1d72f3c4b0

This workflow will perform OxoG filtering on a set of VCFs. It will produce VCFs and their associated index files.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: pcawg_oxog_wf.cwl

Branch/Commit ID: cf1f7f985c72cdf6ee0db386791c921376265486

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 0cf06f13527b380d21d0f335aaea3e564094ed8f

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: 316831663e84623eb0e3a260af252fef441924d4

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: d4e5e533ee6dc93bfaf1c4bbb2ab40812a8f4792

https://github.com/NLeSC/scriptcwl.git

Path: tests/data/echo.scattered.cwl

Branch/Commit ID: 56274fd44550c65385a1ab127402b7339fc18043

https://github.com/mr-c/cwltests.git

Path: cwl/packed.cwl

Branch/Commit ID: 97d571496beb2411121f764c92e3b18de34396fe

Packed ID: workflow_select_shape.cwl

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: oxog_varbam_annotate_wf.cwl

Branch/Commit ID: 6366ed398da10019b6d81a789291af6d909f28f4

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: ef3c7b2638b3125ee9628d292d014e332cee83b0

https://github.com/FarahZKhan/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7