Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Add snv and indel bam-readcount files to a vcf
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![]() Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: 68eda647259849ca81ac0bb07a24bc8a4465a630 |
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Detect DoCM variants
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![]() Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: 68eda647259849ca81ac0bb07a24bc8a4465a630 |
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wgs alignment and germline variant detection
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![]() Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: 74647cc0f1abac4ee22950cfa89c44cf2ca3cffd |
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Unaligned BAM to BQSR
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![]() Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: 54846feabbf008c1946db2a86d87252e0edd95b0 |
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topmed-alignment-checker.cwl
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![]() Path: aligner/sbg-alignment-cwl/topmed-alignment-checker.cwl Branch/Commit ID: 6478d5df50d7340311d18f03a056e3db97811269 |
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count-lines11-null-step-wf-noET.cwl
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![]() Path: tests/count-lines11-null-step-wf-noET.cwl Branch/Commit ID: 368b562a1449e8cd39ae8b7f05926b2bfb9b22df |
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Immunotherapy Workflow
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![]() Path: definitions/pipelines/immuno.cwl Branch/Commit ID: e56f1024306aeb427d8aae2fff715ed2e8b8f86f |
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Alignment without BQSR
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![]() Path: definitions/subworkflows/sequence_to_bqsr_mouse.cwl Branch/Commit ID: 3034168d652bfa930ba09af20e473a4564a8010d |
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Hello World
Outputs a message using echo |
![]() Path: tests/wf/hello-workflow.cwl Branch/Commit ID: 89ccbfc53ff3bb6abe2eb90bb7e0091c54c18f5c |
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align-test-files-pack.cwl#main
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![]() Path: ochre/cwl/align-test-files-pack.cwl Branch/Commit ID: a62bf3b31df83784c017d30a83ed8e01d454bf1c Packed ID: main |