Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	umi duplex alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: 6949082038c1ad36d6e9848b97a2537aef2d3805
	CNV_pipeline	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/workflow.cwl Branch/Commit ID: 26ae4914651d5b3e188028d1e9d88a391b3f6730
	align_merge_sas	https://github.com/ncbi/pgap.git Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: 5e92165ac2c11608ab2db42fe2d66eabe72dbb40
	ChIP-seq peak caller workflow MACS2 based This workflow execute peak caller and QC for ChIP-seq using MACS2	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/ChIP-Seq/peak-calling-MACS2.cwl Branch/Commit ID: 11f70a71cb68b3960c2d410ba1fdcd3b8a7e1419
	Unaligned BAM to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: 6b365b79675b2aabfb8d5829bb8df0a6e986b037
	Run tRNAScan	https://github.com/ncbi/pgap.git Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 505b91e41741ccbcd5ebd2b6a09a3be604f9ece3
	genomics-workspace-transcript.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: flow_genomicsWorkspace/genomics-workspace-transcript.cwl Branch/Commit ID: b1e1b906fcfb2c0fad8811fb8ab03009282c1d19
	Unaligned to aligned BAM	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
	picard_markduplicates Mark duplicates	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/picard_markduplicates.cwl Branch/Commit ID: 26ae4914651d5b3e188028d1e9d88a391b3f6730
	sequence (bam or fastqs) to trimmed fastqs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_trimmed_fastq.cwl Branch/Commit ID: 061d3a2fbcd8a1c39c0b38c549e528deb24a9d54