Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Metagenomics workflow Workflow pilon assembly polishing Steps: - BBmap (Read mapping to assembly) - Pilon	https://git.wur.nl/unlock/cwl.git Path: cwl/workflows/workflow_pilon_mapping.cwl Branch/Commit ID: cd0c19d51068c5407cd70b718a561d4662819d87
	Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: 2801ce53744a085580a8de91cd007c45146b51e8
	bam to trimmed fastqs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq.cwl Branch/Commit ID: 6949082038c1ad36d6e9848b97a2537aef2d3805
	spurious_annot	https://github.com/ncbi/pgap.git Path: spurious_annot/wf_spurious_annot_pass1.cwl Branch/Commit ID: 2801ce53744a085580a8de91cd007c45146b51e8
	extract_gencoll_ids	https://github.com/ncbi/pgap.git Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 17bae57a1f00f5c6db8f3a82d86262f12b8153cf
	wffail.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/wffail.cwl Branch/Commit ID: 8ef515037de411abd2f84b569ad4d4a4f7a2c7a0
	Alignment without BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_bqsr_nonhuman.cwl Branch/Commit ID: 788bdc99c1d5b6ee7c431c3c011eb30d385c1370
	kmer_top_n_extract	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: 6fad27f92dd604eca0e341178f594a560d70953b
	Execute CRISPR	https://github.com/ncbi/pgap.git Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: 2801ce53744a085580a8de91cd007c45146b51e8
	tmb.cwl Workflow for calculating TMB tumor mutational burden on a single sample	https://github.com/mskcc/pluto-cwl.git Path: cwl/tmb.cwl Branch/Commit ID: 2a88d5c2d139ff817b21b480ccf9c1cd7139b00c