Explore Workflows
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hotspot_vld.cwl
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![]() Path: cwl/workflows/hotspot_vld.cwl Branch/Commit ID: e233d50cbe7d411c01ac4076c2e4ec4d211b9429 |
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Per-region pindel
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![]() Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 18d8efdc4c97c1c9222f603f529b909b36fa42e7 |
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Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
![]() Path: Ambarish_Kumar_SOP/Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl Branch/Commit ID: 2c47ee8b02219cf9959f7ad5e4cf2e6d6f5b0601 |
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02-trim-pe.cwl
ATAC-seq 02 trimming - reads: PE |
![]() Path: v1.0/ATAC-seq_pipeline/02-trim-pe.cwl Branch/Commit ID: 6e008c1170ef818b6c4c63f0eec7baa4f7be7b3c |
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SSU-from-tablehits.cwl
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![]() Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: ca6ca613f0d3728d9589a6ca6293e66dfde87bfb |
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exome alignment and somatic variant detection
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![]() Path: definitions/pipelines/somatic_exome_mouse.cwl Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e |
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04-quantification-pe-unstranded.cwl
RNA-seq 04 quantification |
![]() Path: v1.0/RNA-seq_pipeline/04-quantification-pe-unstranded.cwl Branch/Commit ID: 6e008c1170ef818b6c4c63f0eec7baa4f7be7b3c |
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04-quantification-se-unstranded.cwl
RNA-seq 04 quantification |
![]() Path: v1.0/RNA-seq_pipeline/04-quantification-se-unstranded.cwl Branch/Commit ID: 6e008c1170ef818b6c4c63f0eec7baa4f7be7b3c |
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if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl
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![]() Path: cwls/toolkit/if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl Branch/Commit ID: eed00bbabeae73ef7f00712da17861eade3b9057 |
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alignment for mouse with qc
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![]() Path: definitions/pipelines/alignment_wgs_mouse.cwl Branch/Commit ID: 3bb0693076adc1543079a6b136c74906ad546ac6 |