Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph exome alignment and somatic variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome.cwl

Branch/Commit ID: 0b0ad1a54f0f6849dc645449b079470448a23095
workflow graph output-arrays-int-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/output-arrays-int-wf.cwl

Branch/Commit ID: 86c46cb397de029e4c91f02cca40fa2b54d22f37
workflow graph Filter Protein Seeds; Find ProSplign Alignments

https://github.com/ncbi/pgap.git

Path: protein_alignment/wf_compart_filter_prosplign.cwl

Branch/Commit ID: 89839cdb0a3216024f5f97af5581ae9753de0496
workflow graph workflow-fetch-hmmscan.cwl

https://github.com/ebi-wp/webservice-cwl.git

Path: workflows/workflow-fetch-hmmscan.cwl

Branch/Commit ID: 215ed5c67a58df03be61e976a93588075bd255a5
workflow graph workflow-fasta-pratt.cwl

https://github.com/ebi-wp/webservice-cwl.git

Path: workflows/workflow-fasta-pratt.cwl

Branch/Commit ID: 215ed5c67a58df03be61e976a93588075bd255a5
workflow graph mut.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mut.cwl

Branch/Commit ID: 4c2667ef937c341af26e4f72b01056a06dce84fb
workflow graph samples_fillout_index_workflow.cwl

Wrapper to run indexing on all bams before submitting for samples fillout Includes secondary input channels to allow for including .bam files that do not have indexes Also include other extra handling needed for files that might not meet needs for the fillout workflow NOTE: need v1.1 upgrade so we can do it all from a single channel with optional secondary files; https://www.commonwl.org/v1.1/CommandLineTool.html#SecondaryFileSchema

https://github.com/mskcc/pluto-cwl.git

Path: cwl/samples_fillout_index_workflow.cwl

Branch/Commit ID: 7eb2b0a4d37018142233d770595ac2e00376dab4
workflow graph gcaccess_from_list

https://github.com/ncbi/pgap.git

Path: task_types/tt_gcaccess_from_list.cwl

Branch/Commit ID: 89839cdb0a3216024f5f97af5581ae9753de0496
workflow graph kmer_ref_compare_wnode

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_ref_compare_wnode.cwl

Branch/Commit ID: 89839cdb0a3216024f5f97af5581ae9753de0496
workflow graph Subworkflow to allow calling different SV callers which require bam files as inputs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/single_sample_sv_callers.cwl

Branch/Commit ID: ad65dc1dfff9afa5077f498b85e699716c47f6cb