Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Unaligned BAM to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: e8b7759826df40b8bb821b40b15aea960a4951c4
	kmer_cache_store	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: 1b9094d70f620bb2e51072dd2150150aa4927439
	trnascan_wnode and gpx_qdump combined	https://github.com/ncbi/pgap.git Path: bacterial_trna/wf_scan_and_dump.cwl Branch/Commit ID: e2a6cbcc36212433d8fbc804919442787a5e2a49
	revsort-single-no-docker.cwl Reverse the lines in a document, then sort those lines.	https://github.com/Duke-GCB/calrissian.git Path: input-data/revsort-single-no-docker.cwl Branch/Commit ID: 68362997c0f3d73dc753f08696148d1c5de70017
	Run pindel on provided region	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5
	alignment_bwa_mem_prod.cwl	https://github.com/uc-cdis/genomel_pipelines.git Path: genomel/cwl/workflows/harmonization/alignment_bwa_mem_prod.cwl Branch/Commit ID: c661469505c606e1353f23c21a6654724a9d8d63
	Running cellranger count and lineage inference	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: c23dc7f113ca0b0a3127a5d6c696e98d4799460c
	03-map-pe-blacklist-removal.cwl ATAC-seq 03 mapping - reads: PE - blacklist removal	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/03-map-pe-blacklist-removal.cwl Branch/Commit ID: 1a0dd34d59ec983d1f7ad77bff35da2f016e3134
	ChIP-seq peak caller workflow MACS2 based This workflow execute peak caller and QC for ChIP-seq using MACS2	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/ChIP-Seq/peak-calling-MACS2.cwl Branch/Commit ID: 0207b0171ab142dfb85db9c39050c5b4be51dd9e
	haplotypecaller.cwl	https://github.com/uc-cdis/genomel_pipelines.git Path: genomel/cwl/workflows/variant_calling/haplotypecaller.cwl Branch/Commit ID: c661469505c606e1353f23c21a6654724a9d8d63