Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Preprocess fastq

Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed.

https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/preprocess-fastq.workflow.cwl

Branch/Commit ID: 8698ae242c1f7addf0003663192bb43d7cd36d09
workflow graph abundance

abundace profiles from annotated files, for protein and/or rna

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/abundance.workflow.cwl

Branch/Commit ID: 8698ae242c1f7addf0003663192bb43d7cd36d09
workflow graph exome alignment and tumor-only variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/exome.cwl

Branch/Commit ID: 5a4fed24f01f6d7c7ce1f595b272d82d97d4f9bd
workflow graph gunzip-workflow.cwl

https://github.com/NAL-i5K/CWL_Common-Workflow-Language.git

Path: demo_workflow4/gunzip-workflow.cwl

Branch/Commit ID: e298fc6e247e7c87630a62d86d95f5de2271d9c2
workflow graph qc-basic.workflow.cwl

https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/qc-basic.workflow.cwl

Branch/Commit ID: 8698ae242c1f7addf0003663192bb43d7cd36d09
workflow graph Detect DoCM variants

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/docm_germline.cwl

Branch/Commit ID: fa0bf2a51b72cd0869253943b67aa8e271633945
workflow graph Varscan Workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/varscan_germline.cwl

Branch/Commit ID: fa0bf2a51b72cd0869253943b67aa8e271633945
workflow graph count-lines13-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines13-wf.cwl

Branch/Commit ID: 819c81af5449ec912bbbbead042ad66b8d3fd8d4
workflow graph Tumor-Only Detect Variants workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/tumor_only_detect_variants.cwl

Branch/Commit ID: 5a4fed24f01f6d7c7ce1f595b272d82d97d4f9bd
workflow graph umi per-lane alignment subworkflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/umi_alignment.cwl

Branch/Commit ID: 767e3dc7448da5bc44e4817c4161f6e4530032e2