Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Workflow that executes the Sounder SIPS end-to-end L1b processing

Requires valid AWS credentials as input arguments

 https://github.com/unity-sds/unity-sps-workflows.git

Path: sounder_sips/ssips_L1b_workflow.cwl

Branch/Commit ID: main
workflow graph pipeline-se-blacklist-removal.cwl

ATAC-seq pipeline - reads: SE - with blacklist removal

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/pipeline-se-blacklist-removal.cwl

Branch/Commit ID: master
workflow graph module-2.cwl

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/module-2.cwl

Branch/Commit ID: 0.0.33_dmp
workflow graph workflow.cwl

https://github.com/ljdursi/cwl-tutorial.git

Path: bioinformatics/tools/workflow.cwl

Branch/Commit ID: master
workflow graph pipeline.cwl

https://github.com/hubmapconsortium/ome-tiff-pyramid.git

Path: pipeline.cwl

Branch/Commit ID: f0f5054
workflow graph maf-processing-pair.cwl

https://github.com/mskcc/argos-cwl.git

Path: modules/pair/maf-processing-pair.cwl

Branch/Commit ID: master
workflow graph chksum_xam_to_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_xam_to_interleaved_fq.cwl

Branch/Commit ID: 0.5.0_test
workflow graph count-lines11-null-step-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines11-null-step-wf.cwl

Branch/Commit ID: main
workflow graph umi per-lane alignment subworkflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/umi_alignment.cwl

Branch/Commit ID: downsample_and_recall
workflow graph metabarcode (gene amplicon) analysis for fastq files

protein - qc, preprocess, annotation, index, abundance

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/metabarcode-fasta.workflow.cwl

Branch/Commit ID: master