Explore Workflows

ATAC-seq 01 QC - reads: SE

https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/01-qc-se.cwl

Branch/Commit ID: c269cecf317c699d6f3a0f44782e90914bce62b5

https://github.com/rdocking/sgseq_cwl.git

Path: cwl/build_splice_variant_graphs_workflow.cwl

Branch/Commit ID: 6e92e70511fa72f6aaef75b54bcc7d1ebbe95b65

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/fail-unconnected.cwl

Branch/Commit ID: 26c8b9ca0ffd37c5f76a46a36315f6fd944833fe

https://github.com/yyoshiaki/cwl_user_guide.git

Path: kallisto/kallisto-pe-workflow.cwl

Branch/Commit ID: f0da3f058427d1a03350776fe4f7bd31f9ae989c

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines6-wf.cwl

Branch/Commit ID: a94d75178c24ce77b59403fb8276af9ad1998929

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/unix/unix_align_workflow.cwl

Branch/Commit ID: 0c1a40ea1efb1656644ccec0b7abe659539340e7

Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed.

https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/preprocess-fastq.workflow.cwl

Branch/Commit ID: 1b1bb901b849b32cbfc4cb58d736bb617d514319

https://github.com/ddbj/human-reseq.git

Path: Workflows/bams2gvcf.woBQSR_male_chrXY_wXTR.cwl

Branch/Commit ID: 2862ec3c609561245267e5f32e7b94eb353e2d5b

https://github.com/ddbj/human-reseq.git

Path: Workflows/fastqPE2bam.cwl

Branch/Commit ID: 2862ec3c609561245267e5f32e7b94eb353e2d5b

https://github.com/ddbj/human-reseq.git

Path: Workflows/bams2gvcf.wBQSR.cwl

Branch/Commit ID: 2862ec3c609561245267e5f32e7b94eb353e2d5b