Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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tt_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: 45d134ce3d436c53637a2d83755e9b4613267e9f |
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WGS and MT analysis for fastq files
rna / protein - qc, preprocess, filter, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/wgs-noscreen-fasta.workflow.cwl Branch/Commit ID: 1b1bb901b849b32cbfc4cb58d736bb617d514319 |
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tmb_workflow.cwl
Workflow to run the TMB analysis on a batch of samples and merge the results back into a single data clinical file |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/tmb_workflow.cwl Branch/Commit ID: 2e1a01a788126f2901ffecc92a48fcbcb81776e1 |
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hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: 89839cdb0a3216024f5f97af5581ae9753de0496 |
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qiime2 DADA2 detect/correct sequence data
Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/duke-gcb/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: e2dc95d4f12210359360d814382e7201d836dfcf Packed ID: qiime2-03-dada2.cwl |
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qiime2 create feature visual summaries
FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/duke-gcb/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: e2dc95d4f12210359360d814382e7201d836dfcf Packed ID: qiime2-04-features.cwl |
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qiime2 create phylogenetic tree
Generate a tree for phylogenetic diversity analyses from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/duke-gcb/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: e2dc95d4f12210359360d814382e7201d836dfcf Packed ID: qiime2-05-phylogeny.cwl |
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Immunotherapy Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/immuno.cwl Branch/Commit ID: 441b85003fdc10cf4cbf333d89acb4d23b0fef32 |
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Nested workflow example
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/nested.cwl Branch/Commit ID: 58274ef14adbbf7e09dbf6e5170780179669078b |
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gathered exome alignment and somatic variant detection for cle purpose
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/gathered_cle_somatic_exome.cwl Branch/Commit ID: 441b85003fdc10cf4cbf333d89acb4d23b0fef32 |
