Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Apply filters to VCF file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: d3e4bf55753cd92f97537c7d701187ea92d1e5f0
	Prepare user input Prepare user input for NCBI-PGAP pipeline	https://github.com/ncbi/pgap.git Path: prepare_user_input2.cwl Branch/Commit ID: 5ec226c941562124032ca6861bc8d1aeabf9d91a
	Run pindel on provided region	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: e8b7759826df40b8bb821b40b15aea960a4951c4
	hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: 1a6b9e5dea09caa0debbaff30ca39005dfa5e4d4
	process VCF workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: c625e05eefb1754353c1bdfa46c01dc61e6233dd
	Raw sequence data to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: d3e4bf55753cd92f97537c7d701187ea92d1e5f0
	Per-region pindel	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 742dbafb5fb103d8578f48a0576c14dd8dae3b2a
	varscan somatic workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 742dbafb5fb103d8578f48a0576c14dd8dae3b2a
	bgzip and index VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 742dbafb5fb103d8578f48a0576c14dd8dae3b2a
	HS Metrics workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: d3e4bf55753cd92f97537c7d701187ea92d1e5f0