Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Detect DoCM variants	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: 0c4855bf23622828413ecb09dd30754691c28014
	step-valuefrom-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/step-valuefrom-wf.cwl Branch/Commit ID: 875b928ce50a3202f5954843b79ea86683c160fa
	Prepare user input Prepare user input for NCBI-PGAP pipeline	https://github.com/ncbi/pgap.git Path: prepare_user_input2.cwl Branch/Commit ID: 5461e63dc4714bb81e1c9f58e436c8465107a199
	etl.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/checkout_workflow/etl.cwl Branch/Commit ID: 2f7c0e92e7b88b57b86602f11c595661c374008a
	bgzip and index VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: f401b02285f30de1c12ac2859134099fe04be33f
	count-lines1-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/count-lines1-wf.cwl Branch/Commit ID: d64178072bc4fc9700ab80cdf90146890b96587e
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 72c4c3115956340f35e72cda1fd46ec276f1ca03
	abundance abundace profiles from annotated files, for protein and/or rna	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/abundance-clca.workflow.cwl Branch/Commit ID: 210a46717d091c186235d211c1175f02d0a644b6
	merge and annotate svs with population allele freq	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: 72c4c3115956340f35e72cda1fd46ec276f1ca03
	transform.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/dnaseq/transform.cwl Branch/Commit ID: a3eec6c1081d28efe00a0d269fb41303acc4ccdd