Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Bisulfite alignment and QC
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: 0c4855bf23622828413ecb09dd30754691c28014 |
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fp_filter workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: 6a55118f915e24d2ad008c93a02d9de5643f5511 |
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hisat2-cufflinks_wf_se.cwl
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https://github.com/pitagora-network/pitagora-cwl.git
Path: workflows/hisat2-cufflinks/single_end/hisat2-cufflinks_wf_se.cwl Branch/Commit ID: e2528f4d7e4ba5664fc171f9a25fc1490ae27c91 |
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l7g-liftover.cwl
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https://github.com/curoverse/l7g.git
Path: cwl-version/experimental/l7g-tile-assembly/tile-assembly-hg19/l7g-liftover.cwl Branch/Commit ID: 7e3bca17f8c4349357c6d01cae54e27047ff9e7d |
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gp_makeblastdb
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https://github.com/ncbi/pgap.git
Path: progs/gp_makeblastdb.cwl Branch/Commit ID: 50d161364e2859ed5c95ef07c9f7234f1431cf31 |
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Detect DoCM variants
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: 0c4855bf23622828413ecb09dd30754691c28014 |
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step-valuefrom-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/step-valuefrom-wf.cwl Branch/Commit ID: 875b928ce50a3202f5954843b79ea86683c160fa |
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Prepare user input
Prepare user input for NCBI-PGAP pipeline |
https://github.com/ncbi/pgap.git
Path: prepare_user_input2.cwl Branch/Commit ID: 5461e63dc4714bb81e1c9f58e436c8465107a199 |
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etl.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/checkout_workflow/etl.cwl Branch/Commit ID: 2f7c0e92e7b88b57b86602f11c595661c374008a |
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bgzip and index VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: f401b02285f30de1c12ac2859134099fe04be33f |
