Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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bwa_mem
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_mem.cwl Branch/Commit ID: 32a040f94e9798bf91858da51598f0d68c35797d |
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foreign_screening.cwl
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https://github.com/ncbi/pgap.git
Path: vecscreen/foreign_screening.cwl Branch/Commit ID: 505b91e41741ccbcd5ebd2b6a09a3be604f9ece3 |
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wgs alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: 9cbf2a483e1b9e4cdb8e2564be27a9e64fc1169e |
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Unaligned BAM to BQSR and VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 3042812447d9e8889c6118986490e9c9b9b13223 |
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epigenome-chip-seq.packed.cwl#main
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https://github.com/pitagora-network/DAT2-cwl.git
Path: workflow/epigenome-chip-seq/epigenome-chip-seq.packed.cwl Branch/Commit ID: 0cd20e1be620ae0817a1aa4286d73b78c89809f0 Packed ID: main |
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Cell Ranger Build Reference Indices
Cell Ranger Build Reference Indices =================================== |
https://github.com/datirium/workflows.git
Path: workflows/cellranger-mkref.cwl Branch/Commit ID: 935a78f1aff757f977de4e3672aefead3b23606b |
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umi duplex alignment workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: 6f9f8a2057c6a9f221a44559f671e87a75c70075 |
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final_filtering
Final filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/final_filtering.cwl Branch/Commit ID: de9cb009f8fe0c8d5a94db5c882cf21ddf372452 |
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cnv_gridss
CNV GRIDSS calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/abstract_operations/subworkflows/cnv_gridss.cwl Branch/Commit ID: 3f6a871f81f343cf81a345f73ff2eeac70804b8c |
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FASTQ to BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fastq_to_bqsr.cwl Branch/Commit ID: 6f9f8a2057c6a9f221a44559f671e87a75c70075 |
