Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Vcf concordance evaluation workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_eval_concordance.cwl Branch/Commit ID: a59a803e1809a8fbfabca6b8962a8ad66dd01f1d
	bgzip and index VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: a59a803e1809a8fbfabca6b8962a8ad66dd01f1d
	ROSE: rank ordering of super-enhancers Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff)	https://github.com/datirium/workflows.git Path: workflows/super-enhancer.cwl Branch/Commit ID: 3d280a2a4b4f1560f56991086f712fa22ddc3364
	samtools_view_sam2bam	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: 9ac2d150a57d1996210ed6a44dd0c0404dab383c
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 40097e1ed094c5b42b68f3db2ff2cbe78c182479
	Unaligned bam to sorted, markduped bam	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: 889a077a20c0fdb01f4ed97aa4bc40f920c37a1a
	Apply filters to VCF file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/filter_vcf_mouse.cwl Branch/Commit ID: a59a803e1809a8fbfabca6b8962a8ad66dd01f1d
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 788bdc99c1d5b6ee7c431c3c011eb30d385c1370
	Running cellranger count and lineage inference	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: 479c9b3e3fa32ec9c7cd4073cfbccc675fd254d9
	bam_filtering BAM filtering	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/abstract_operations/subworkflows/bam_filtering.cwl Branch/Commit ID: aaecc710f76be9285288a975cc786e354bc9bedf