Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 5c49c5a53259d4c88a02750f1a16a3c02d711115 |
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Runs InterProScan on batches of sequences to retrieve functional annotations.
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https://github.com/mscheremetjew/workflow-is-cwl.git
Path: workflows/InterProScan-v5-chunked-wf.cwl Branch/Commit ID: 0be3513056e3ebbf7eac38bc1f066d846414bd6d |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 5c49c5a53259d4c88a02750f1a16a3c02d711115 |
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wgs alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/wgs_alignment.cwl Branch/Commit ID: 5c49c5a53259d4c88a02750f1a16a3c02d711115 |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 49508a2757ff2f49f1c200774a38af1c12b531bf |
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wf-variantcall.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: giab-chm/giab-chm-workflow/wf-variantcall.cwl Branch/Commit ID: a297e87e014de998b8df9c90700c29173ec09932 |
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wgs alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/wgs_alignment.cwl Branch/Commit ID: 49508a2757ff2f49f1c200774a38af1c12b531bf |
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wf-alignment.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: giab-chm/giab-chm-workflow/wf-alignment.cwl Branch/Commit ID: a297e87e014de998b8df9c90700c29173ec09932 |
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wgs alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: 5c49c5a53259d4c88a02750f1a16a3c02d711115 |
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trnascan_wnode and gpx_qdump combined
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https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_scan_and_dump.cwl Branch/Commit ID: 23f0ee7a36649ab37cabdd9277b7c82d098be79c |
