Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph PGAP Pipeline

PGAP pipeline for external usage, powered via containers

 https://github.com/ncbi/pgap.git

Path: wf_common.cwl

Branch/Commit ID: 61eaea2f746c8a1fc2a2b731056b068e28ca4e20
workflow graph exome alignment with qc

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_exome.cwl

Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9
workflow graph hisat2-cufflinks_wf_se.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/hisat2-cufflinks/single_end/hisat2-cufflinks_wf_se.cwl

Branch/Commit ID: 14c76e15665ef0566eae5c2be75dba7feb74a50b
workflow graph Subworkflow to allow calling different SV callers which require bam files as inputs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/single_sample_sv_callers.cwl

Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9
workflow graph hisat2-cufflinks_wf_pe.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/hisat2-cufflinks/paired_end/hisat2-cufflinks_wf_pe.cwl

Branch/Commit ID: 14c76e15665ef0566eae5c2be75dba7feb74a50b
workflow graph tophat2-cufflinks_wf_pe.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/tophat2-cufflinks/paired_end/tophat2-cufflinks_wf_pe.cwl

Branch/Commit ID: 14c76e15665ef0566eae5c2be75dba7feb74a50b
workflow graph download_gtf.cwl

https://github.com/yyoshiaki/VIRTUS.git

Path: workflow/download_gtf.cwl

Branch/Commit ID: 16dbe9d99137cbfee834fc22b79190f812543f7e
workflow graph kmer_cache_retrieve

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_retrieve.cwl

Branch/Commit ID: 6fad27f92dd604eca0e341178f594a560d70953b
workflow graph revsort-single.cwl

Reverse the lines in a document, then sort those lines.

 https://github.com/Duke-GCB/calrissian.git

Path: input-data/revsort-single.cwl

Branch/Commit ID: 6428fa28ae1da23a40ed3e7e5c169f4eeea68d62
workflow graph gk-full-step-siesta.cwl

https://github.com/vdikan/cwl-gk-thermal.git

Path: cwl/gk-full-step-siesta.cwl

Branch/Commit ID: 48f4b8266a5a199cfc100d45148996f10a092f3b