Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 72c4c3115956340f35e72cda1fd46ec276f1ca03
	abundance abundace profiles from annotated files, for protein and/or rna	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/abundance-clca.workflow.cwl Branch/Commit ID: 210a46717d091c186235d211c1175f02d0a644b6
	merge and annotate svs with population allele freq	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: 72c4c3115956340f35e72cda1fd46ec276f1ca03
	transform.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/dnaseq/transform.cwl Branch/Commit ID: a3eec6c1081d28efe00a0d269fb41303acc4ccdd
	hisat2_index.cwl	https://github.com/rawgene/cwl.git Path: workflows/hisat2_index.cwl Branch/Commit ID: 33a3cdba1184ad14e7a168eef3c505b9b4332f47
	module-1	https://github.com/mskcc/roslin-variant.git Path: setup/cwl/module-1.cwl Branch/Commit ID: b5ce620cd29416412181929a83695286786c4e7b
	umi per-lane alignment subworkflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: 5c4125344b1b9125ad04d7e768ecc99901570a7a
	js_output_workflow.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/js_output_workflow.cwl Branch/Commit ID: 875b928ce50a3202f5954843b79ea86683c160fa
	BLAST against rRNA db	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_blastn.cwl Branch/Commit ID: 29deae89a9898bb4dcfc27b7391b7d5067e65068
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 67f56d3b9c70ad56019ed8aa8d50a128e02be43b