Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph GEM peak calling

This workflow execute peak calling using GEM

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/ChIP-Seq/gem.cwl

Branch/Commit ID: 793e327acc1d159ff601043ee88651fca62350dd
workflow graph conflict.cwl#main

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/conflict.cwl

Branch/Commit ID: 912282ed4d528aa33c33b8a8d99e6992b6ded760

Packed ID: main
workflow graph directory.cwl

Inspect provided directory and return filenames. Generate a new directory and return it (including content).

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/directory.cwl

Branch/Commit ID: efd59864c24d97e6d0d1d273025d3ef9003fa44d
workflow graph Unaligned to aligned BAM

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/align.cwl

Branch/Commit ID: bc3e2a0666812d541418a82d0dfc4f0bba595be3
workflow graph count-lines9-wf-noET.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines9-wf-noET.cwl

Branch/Commit ID: e515226f8ac0f7985cd94dae4a301150adae3050
workflow graph workflow-transeq-blast-clustalo.cwl

https://github.com/ebi-wp/webservice-cwl.git

Path: workflows/workflow-transeq-blast-clustalo.cwl

Branch/Commit ID: 215ed5c67a58df03be61e976a93588075bd255a5
workflow graph qiime2 create feature visual summaries

FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: c15f7d33153a36bf08509c3ea046d17ebe07c6bc

Packed ID: qiime2-04-features.cwl
workflow graph Unaligned BAM to BQSR and VCF

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_bqsr.cwl

Branch/Commit ID: baa16f20e91a3f11f8475896e2a66cee183c0d7d
workflow graph umi molecular alignment fastq workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_umi_molecular.cwl

Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405
workflow graph Subworkflow to allow calling different SV callers which require bam files as inputs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/single_sample_sv_callers.cwl

Branch/Commit ID: 258bd4353ad1ca7790b3ae626bf42ab8194e7561