Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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gathered exome alignment and somatic variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/gathered_somatic_exome.cwl Branch/Commit ID: 86fbeb95ef85111f3b4c6bc2bba8f06cef64e157 |
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scatter-wf1.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/scatter-wf1.cwl Branch/Commit ID: 86c46cb397de029e4c91f02cca40fa2b54d22f37 |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: 60edaf6f57eaaf02cda1a3d8cb9a825aa64a43e2 |
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gatk4W-copy-new.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
https://github.com/ambarishK/bio-cwl-tools.git
Path: gatk4W-copy-new.cwl Branch/Commit ID: 690ff2fa1ef356c42003e4b9986d39f4e44806a8 |
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count-lines9-wf-noET.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/count-lines9-wf-noET.cwl Branch/Commit ID: 1f3ef888d9ef2306c828065c460c1800604f0de4 |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: 93656ed6582073e434eab168c610625a835dce37 |
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kmer_cache_store
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: 5ec226c941562124032ca6861bc8d1aeabf9d91a |
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ani_top_n
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https://github.com/ncbi/pgap.git
Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: be32f1363f9a9a9247d738e9593b207e9c5172c8 |
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assemble.cwl
Assemble a set of reads using SKESA |
https://github.com/ncbi/pgap.git
Path: assemble.cwl Branch/Commit ID: 54c5074587af001a44eccb4762a4cb25fa24cb3e |
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mutect parallel workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: e0b3c76e38630fb6234414b5adebfb6a4fb23117 |
