Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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ST520110.cwl
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https://github.com/Marco-Salvi/cwl-ro-crate.git
Path: ST520110.cwl Branch/Commit ID: main |
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per_cluster_workflow.cwl
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https://github.com/fstrozzi/scalability-reproducibility-chapter.git
Path: CWL/per_cluster_workflow.cwl Branch/Commit ID: master |
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exome alignment and tumor-only variant detection
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/tumor_only_exome.cwl Branch/Commit ID: downsample_and_recall |
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Build STAR indices
Workflow runs [STAR](https://github.com/alexdobin/STAR) v2.5.3a (03/17/2017) PMID: [23104886](https://www.ncbi.nlm.nih.gov/pubmed/23104886) to build indices for reference genome provided in a single FASTA file as fasta_file input and GTF annotation file from annotation_gtf_file input. Generated indices are saved in a folder with the name that corresponds to the input genome. |
https://github.com/datirium/workflows.git
Path: workflows/star-index.cwl Branch/Commit ID: c5bae2ca862c764911b83d1f15ff6af4e2a0db28 |
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Bisulfite QC tools
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: downsample_and_recall |
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Filter Protein Seeds I; Find ProSplign Alignments I
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: aa64bf6a90e0780ab564de865dbb027df98c0a01 |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: caea457 |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: 5e82174 |
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functional analysis prediction with InterProScan
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https://github.com/FarahZKhan/ebi-metagenomics-cwl.git
Path: workflows/functional_analysis.cwl Branch/Commit ID: master |
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exome alignment and tumor-only variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_exome.cwl Branch/Commit ID: 457e101e3fb87e7fd792357afce00ed8ccbfbcdb |
