Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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downsample unaligned BAM and align
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: e509210450e4c62aecb99a228fc97f0eae2d9580 |
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wf-loadContents4.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/wf-loadContents4.cwl Branch/Commit ID: b60a42e3cc417c5b75b88fd7c6681abcc7ff5b89 |
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HBA_target_VLBI.cwl
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https://git.astron.nl/RD/LINC.git
Path: workflows/HBA_target_VLBI.cwl Branch/Commit ID: aa447a214b0be934805d1c751e4ce91f79b8922b |
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PGAP Pipeline, simple user input, PGAPX-134
PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template) |
https://github.com/ncbi/pgap.git
Path: pgap.cwl Branch/Commit ID: 546742b523ce12f6246a52c838a51920a08dad4b |
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Filter Protein Seeds; Find ProSplign Alignments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: 2a81fcde75ca7665814c8de2210c7bc3121a08a3 |
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scatter-wf4.cwl#main
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/scatter-wf4.cwl Branch/Commit ID: 227f35a5ed50c423afba2353871950aa61d58872 Packed ID: main |
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Bacterial Annotation, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_2nd_pass.cwl Branch/Commit ID: dd53e6d71282b0619ef7123ba2d258b30aef2dd0 |
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Bacterial Annotation, ab initio (first pass) searched against AntiFam
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_ab_initio_antifam.cwl Branch/Commit ID: dd53e6d71282b0619ef7123ba2d258b30aef2dd0 |
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Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_ab_initio_training.cwl Branch/Commit ID: dd53e6d71282b0619ef7123ba2d258b30aef2dd0 |
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checkm
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https://github.com/ncbi/pgap.git
Path: checkm/wf_checkm.cwl Branch/Commit ID: dd53e6d71282b0619ef7123ba2d258b30aef2dd0 |
