Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph exome alignment and germline variant detection, with optitype for HLA typing

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_exome_hla_typing.cwl

Branch/Commit ID: c235dc6d623879a6c4f5fb307f545c9806eb2d23
workflow graph revsort_datetime.cwl

Reverse the lines in a document, then sort those lines.

 https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/revsort_datetime.cwl

Branch/Commit ID: 56677117e7f7e2ebadfaf321aab7c6c45019dff1
workflow graph scatter-wf2_v1_0.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/scatter-wf2_v1_0.cwl

Branch/Commit ID: e413f9b185f0060ffbdd876062133d65daecb7da
workflow graph assemble.cwl

Assemble a set of reads using SKESA

https://github.com/ncbi/pgap.git

Path: assemble.cwl

Branch/Commit ID: 5d5c4b4ed6d6de42eda2c68aefcf738c201517fb
workflow graph exome alignment with qc, no bqsr, no verify_bam_id

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_exome_nonhuman.cwl

Branch/Commit ID: 39ac49f5d080bbb6bfa97246f46a5b621254f622
workflow graph record-in-secondaryFiles-missing-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/record-in-secondaryFiles-missing-wf.cwl

Branch/Commit ID: eb3f25a9e9414a7dba394f7627e02e63d7f1418c
workflow graph map-ordering-v1_2.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/map-ordering-v1_2.cwl

Branch/Commit ID: 02d6dbd3d48d50adfd4afb1f7d92e8a4284bcab9
workflow graph selfcal_targ_hba.cwl

https://git.astron.nl/RD/LINC.git

Path: workflows/linc_target/selfcal_targ_hba.cwl

Branch/Commit ID: 035f66ec0f260628424c9621aed97f7cbf35e737
workflow graph count-lines7-single-source-wf_v1_1.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/count-lines7-single-source-wf_v1_1.cwl

Branch/Commit ID: 02d6dbd3d48d50adfd4afb1f7d92e8a4284bcab9
workflow graph qc_workflow.cwl

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/QC/qc_workflow.cwl

Branch/Commit ID: a1f07d3cf3aa62c24902716091324647491009d6