Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
transform.cwl
|
https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/transform.cwl Branch/Commit ID: f34d3963b33e0a379338cb3cb75b0016f012bf2c |
|
|
|
scatter GATK HaplotypeCaller over intervals
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: bc3e2a0666812d541418a82d0dfc4f0bba595be3 |
|
|
|
preprocess fasta
Remove reads from fasta files based on sequence stats. Return fasta files with reads passed and reads removed. |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/preprocess-fasta.workflow.cwl Branch/Commit ID: 1b1bb901b849b32cbfc4cb58d736bb617d514319 |
|
|
|
extract_readgroups_bam_http.cwl
|
https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_readgroups_bam_http.cwl Branch/Commit ID: f34d3963b33e0a379338cb3cb75b0016f012bf2c |
|
|
|
mut2.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/mut2.cwl Branch/Commit ID: e835bc0487fe42fb330b6222c9be65d18dd81ec9 |
|
|
|
tt_kmer_top_n.cwl
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n.cwl Branch/Commit ID: 6d5e27ee7c01effb14c40619df9c4f6d321a25bf |
|
|
|
readgroup_fastq_se.cwl
|
https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/readgroup_fastq_se.cwl Branch/Commit ID: f34d3963b33e0a379338cb3cb75b0016f012bf2c |
|
|
|
analysis for assembled sequences
rna / protein - qc, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/assembled.workflow.cwl Branch/Commit ID: 1b1bb901b849b32cbfc4cb58d736bb617d514319 |
|
|
|
extract_readgroup_fastq_se_http.cwl
|
https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_readgroup_fastq_se_http.cwl Branch/Commit ID: f34d3963b33e0a379338cb3cb75b0016f012bf2c |
|
|
|
variantcalling_trimmed_mutectwithpon_workflow.cwl
|
https://github.com/teoloup/cwltools.git
Path: variantcalling_trimmed_mutectwithpon_workflow.cwl Branch/Commit ID: 2485f0ecf1f7e6cd57e45ef13fddebbc508b77d4 |
