Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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bwa_index
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_index.cwl Branch/Commit ID: 5230874e81911b6591cf859fe794f71f4eb8bb97 |
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Tumor-Only Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9 |
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gk-load-code-pseudos.cwl
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https://github.com/vdikan/cwl-gk-thermal.git
Path: cwl/gk-load-code-pseudos.cwl Branch/Commit ID: 48f4b8266a5a199cfc100d45148996f10a092f3b |
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format_rrnas_from_seq_entry
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https://github.com/ncbi/pgap.git
Path: task_types/tt_format_rrnas_from_seq_entry.cwl Branch/Commit ID: add6b7724698694e0e72d972e2e85e1ae4e67902 |
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tt_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: add6b7724698694e0e72d972e2e85e1ae4e67902 |
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adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8 |
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Bisulfite QC tools
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: 9a657bc8c462542dc7f57fba9e04dc1669f966ba |
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RNA-Seq alignment and transcript/gene abundance workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9 |
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samtools_view_sam2bam
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: 5230874e81911b6591cf859fe794f71f4eb8bb97 |
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tmb.cwl
Workflow for calculating TMB tumor mutational burden on a single sample |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/tmb.cwl Branch/Commit ID: ab0192b19d01046d5db2fc5233678a97b47210e6 |
