Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph exome alignment and germline variant detection, with optitype for HLA typing

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_exome_hla_typing.cwl

Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5
workflow graph BAM to BEDPE

Comvert BAM to BEDPE and compress the output

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/bamtobedpe-gzip.cwl

Branch/Commit ID: b8f18a03ffbd7d5b78a7f220686b81d539686e98
workflow graph advanced-header.cwl

https://github.com/datirium/workflows.git

Path: metadata/advanced-header.cwl

Branch/Commit ID: 480e99a4bb3046e0565113d9dca294e0895d3b0c
workflow graph nestedworkflows.cwl

https://github.com/common-workflow-language/user_guide.git

Path: _includes/cwl/22-nested-workflows/nestedworkflows.cwl

Branch/Commit ID: 540b9f36322425817e097a348153d97b97376af3
workflow graph extract_readgroup_fastq_se_http.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/extract_readgroup_fastq_se_http.cwl

Branch/Commit ID: ff015418f870bdfbd82ba675eb549fe8b4584b0c
workflow graph tt_fscr_calls_pass1

https://github.com/ncbi/pgap.git

Path: task_types/tt_fscr_calls_pass1.cwl

Branch/Commit ID: 75ea689c0a8c9902b4598b453455857cb08e885a
workflow graph 1st-workflow.cwl

https://github.com/common-workflow-language/user_guide.git

Path: _includes/cwl/22-nested-workflows/1st-workflow.cwl

Branch/Commit ID: 540b9f36322425817e097a348153d97b97376af3
workflow graph WGS QC workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/qc_wgs.cwl

Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a
workflow graph pipeline-pe-blacklist-removal.cwl

ATAC-seq pipeline - reads: PE - with blacklist removal

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/pipeline-pe-blacklist-removal.cwl

Branch/Commit ID: 8aabde14169421a7115c5cd48c4740b3a7bd818f
workflow graph Hello World

Outputs a message using echo

 https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/hello-workflow.cwl

Branch/Commit ID: 07ebbea2bdf97955060c1dd563580b386388519b