Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	QuantSeq 3' FWD, FWD-UMI or REV for single-read mRNA-Seq data ### Devel version of QuantSeq 3' FWD, FWD-UMI or REV for single-read mRNA-Seq data	https://github.com/datirium/workflows.git Path: workflows/trim-quantseq-mrnaseq-se-strand-specific.cwl Branch/Commit ID: 9e3c3e65c19873cd1ed3cf7cc3b94ebc75ae0cc5
	SV filtering workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/filter_sv_vcf.cwl Branch/Commit ID: 869b331cfeb9dbd5907498e3eccdebc7c28283e5
	merge and annotate svs with population allele freq and vep	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: 869b331cfeb9dbd5907498e3eccdebc7c28283e5
	rRNA_selection.cwl	https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git Path: tools/rRNA_selection.cwl Branch/Commit ID: 583307878ab83c5845c897f03db920ae8e1929e2
	cram_to_bam workflow	https://github.com/genome/analysis-workflows.git Path: cram_to_bam/workflow.cwl Branch/Commit ID: d1ee6a2a323cee7e4af00c7e0b926c2192038e1d
	Downsample and HaplotypeCaller	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/downsample_and_recall.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
	Create Genomic Collection for Bacterial Pipeline, ASN.1 input	https://github.com/ncbi/pgap.git Path: genomic_source/wf_genomic_source_asn.cwl Branch/Commit ID: 4b73bfeb967ee9f57a0410276f7c39e784f0846f
	wf_trim_partial_and_map_se.cwl This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment	https://github.com/yeolab/eclip.git Path: cwl/wf_trim_partial_and_map_se.cwl Branch/Commit ID: 49a9bcda10de8f55fab2481f424eb9cdf2e5b256
	cluster_blastp_wnode and gpx_qdump combined	https://github.com/ncbi/pgap.git Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: cd97086739ae5988bab09b05e9259675c4b6bce6
	Hello World Outputs a message using echo	https://github.com/common-workflow-library/legacy.git Path: workflows/hello/hello-param.cwl Branch/Commit ID: 767d700e602805112a4c953d166e570cddfa2605