Explore Workflows
View already parsed workflows here or click here to add your own
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running cellranger mkfastq and count
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: No_filters_detect_variants |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 930a2cf |
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oxog_varbam_annotate_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git
Path: oxog_varbam_annotate_wf.cwl Branch/Commit ID: master |
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main-pisces-titr.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: somatic-lowfreq/pisces-titr-workflow/main-pisces-titr.cwl Branch/Commit ID: master |
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collate_unique_SSU_headers.cwl
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 5dc7c5c |
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io-union-input-default-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/io-union-input-default-wf.cwl Branch/Commit ID: master |
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rna_seq_workflow_2.cwl
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https://github.com/alexiswl/novice-tutorial-exercises.git
Path: rna_seq_workflow_2.cwl Branch/Commit ID: main |
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pass-unconnected.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/pass-unconnected.cwl Branch/Commit ID: main |
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LSU-from-tablehits.cwl
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/LSU-from-tablehits.cwl Branch/Commit ID: 5dc7c5c |
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preprocess.cwl
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https://github.com/epigenomics-screw/screw.git
Path: cwl/preprocess.cwl Branch/Commit ID: master |
