Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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wf_get_peaks_pe.cwl
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https://github.com/YeoLab/eclip.git
Path: cwl/wf_get_peaks_pe.cwl Branch/Commit ID: master |
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metabarcode (gene amplicon) analysis for fastq files
protein - qc, preprocess, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/metabarcode-fasta.workflow.cwl Branch/Commit ID: master |
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qiime2 diversity analyses
Alpha and beta diversity analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step3-alpha-analysis.cwl Branch/Commit ID: qiime2-workflow Packed ID: qiime2-06-alpha-beta-diversity.cwl |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: 0746e12 |
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integrity.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/integrity.cwl Branch/Commit ID: 1.0 |
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wesp2.cwl
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https://github.com/cr-ste-justine/chujs-alignment-workflow.git
Path: workflows/wesp2.cwl Branch/Commit ID: dev |
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step-valuefrom4-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/step-valuefrom4-wf.cwl Branch/Commit ID: master |
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Filter single sample sv vcf from depth callers(cnvkit/cnvnator)
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: downsample_and_recall |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: master |
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bam_filtering
BAM filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bam_filtering.cwl Branch/Commit ID: 1.0.5 |
