Explore Workflows
View already parsed workflows here or click here to add your own
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bam to trimmed fastqs and biscuit alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: da335d9963418f7bedd84cb2791a0df1b3165ffe |
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Cellranger Reanalyze
Cellranger Reanalyze ==================== |
https://github.com/datirium/workflows.git
Path: workflows/cellranger-reanalyze.cwl Branch/Commit ID: 581156366f91861bd4dbb5bcb59f67d468b32af3 |
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Single-Cell Preprocessing Pipeline
Devel version of Single-Cell Preprocessing Pipeline =================================================== |
https://github.com/datirium/workflows.git
Path: workflows/single-cell-preprocess.cwl Branch/Commit ID: 581156366f91861bd4dbb5bcb59f67d468b32af3 |
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concat.cwl
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https://github.com/mskcc/pluto-cwl.git
Path: cwl/concat.cwl Branch/Commit ID: 5cad957fec135aa55ca8d588372db0557ca1cad5 |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: b6d3aaf3fa6695061208c6cdca3d7881cc45400d |
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assm_assm_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: 72804b6506c9f54ec75627f82aafe6a28d7a49fa |
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indices-header.cwl
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https://github.com/datirium/workflows.git
Path: metadata/indices-header.cwl Branch/Commit ID: 2005c6b7f1bff6247d015ff6c116bd9ec97158bb |
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FastQC - a quality control tool for high throughput sequence data
FastQC - a quality control tool for high throughput sequence data ===================================== FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis. The main functions of FastQC are: - Import of data from FastQ files (any variant) - Providing a quick overview to tell you in which areas there may be problems - Summary graphs and tables to quickly assess your data - Export of results to an HTML based permanent report - Offline operation to allow automated generation of reports without running the interactive application |
https://github.com/datirium/workflows.git
Path: workflows/fastqc.cwl Branch/Commit ID: 7fb8a1ebf8145791440bc2fed9c5f2d78a19d04c |
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kmer_seq_entry_extract_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: 1e7aa9f0c34987ddafa35f9b1d2c77d99fafbdab |
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Cell Ranger Build Reference Indices
Devel version of Cell Ranger Build Reference Indices pipeline ============================================================= |
https://github.com/datirium/workflows.git
Path: workflows/cellranger-mkref.cwl Branch/Commit ID: 7fb8a1ebf8145791440bc2fed9c5f2d78a19d04c |
