Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Align reference proteins plane complete workflow	https://github.com/ncbi/pgap.git Path: protein_alignment/wf_protein_alignment.cwl Branch/Commit ID: e71779665f42fcf34601b0f65e030bb0dd47fa79
	umi duplex alignment fastq workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/umi_duplex_alignment.cwl Branch/Commit ID: bcc6adaf15035f5ce6fc851e27b1173b0fd20c1c
	Execute CRISPR	https://github.com/ncbi/pgap.git Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919
	adapter for sequence_align_and_tag Some workflow engines won't stage files in our nested structure, so parse it out here	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: a9133c999502acf94b433af8d39897e6c2cdf65f
	dynresreq-workflow.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/dynresreq-workflow.cwl Branch/Commit ID: a062055fddcc7d7d9dbc53d28288e3ccb9a800d8
	bgzip and index VCF	https://github.com/acoffman/dockstore-test.git Path: Dockstore.cwl Branch/Commit ID: f20786d7a4de042180739be18b92b407b52d5072
	running cellranger mkfastq and count	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: 6b365b79675b2aabfb8d5829bb8df0a6e986b037
	exome alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/exome_alignment.cwl Branch/Commit ID: f9600f9959acdc30259ba7e64de61104c9b01f0b
	spurious_annot	https://github.com/ncbi/pgap.git Path: spurious_annot/wf_spurious_annot_pass1.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919
	mutect parallel workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: 4bc0a4577d626b65a4b44683e5a1ab2f7d7faf4c