Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: a670f323e77e02d9b77be9a13d73d5276dd3676c |
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Prepare user input
Prepare user input for NCBI-PGAP pipeline |
https://github.com/ncbi/pgap.git
Path: prepare_user_input2.cwl Branch/Commit ID: e71779665f42fcf34601b0f65e030bb0dd47fa79 |
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hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919 |
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Filter Protein Seeds I; Find ProSplign Alignments I
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919 |
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Seed Protein Alignments I
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_seed_1.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919 |
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Seed Search Compartments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_seed.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919 |
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process VCF workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: ec5355f335852e51c6938809c16ea1d230a3f983 |
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blastp_wnode_naming
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919 |
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Run genomic CMsearch (5S rRNA)
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919 |
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BLAST against rRNA db
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_blastn.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919 |
