Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph trimmed_fastq

Quality Control and Raw Data trimming

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/subworkflows/trimmed_fastq.cwl

Branch/Commit ID: 5cc8306ce84c027db4c092077983294557213136
workflow graph workflow.cwl

https://github.com/Andreja28/cloud-workflows.git

Path: cwl/torso/workflow.cwl

Branch/Commit ID: b2d5b67c9bbc0cce97dcf65f3cdc8da2c156e145
workflow graph workflow-blast-clustalo-phylogeny.cwl

https://github.com/ebi-wp/webservice-cwl.git

Path: workflows/workflow-blast-clustalo-phylogeny.cwl

Branch/Commit ID: 5df6b762980b15b0f6389149311b82bdd6dff37d
workflow graph lobSTR-workflow.cwl

https://github.com/common-workflow-language/cwlviewer.git

Path: src/test/resources/cwl/lobstr-v1/lobSTR-workflow.cwl

Branch/Commit ID: 1282d7530484390dfed25a9c4e6cfa925353172c
workflow graph cnv_gridss

CNV GRIDSS calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/subworkflows/cnv_gridss.cwl

Branch/Commit ID: 5cc8306ce84c027db4c092077983294557213136
workflow graph cnv_manta

CNV Manta calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/subworkflows/cnv_manta.cwl

Branch/Commit ID: 5cc8306ce84c027db4c092077983294557213136
workflow graph kmer_build_tree

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_build_tree.cwl

Branch/Commit ID: 609aead9804a8f31fa9b3dbc7e52105aec487f31
workflow graph hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather

https://github.com/ncbi/pgap.git

Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl

Branch/Commit ID: 8fbfb03088968846bb2c0a79ac50b231b43db64f
workflow graph ROSE: rank ordering of super-enhancers

Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff)

 https://github.com/datirium/workflows.git

Path: workflows/super-enhancer.cwl

Branch/Commit ID: e45ab1b9ac5c9b99fdf7b3b1be396dc42c2c9620
workflow graph kmer_cache_retrieve

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_retrieve.cwl

Branch/Commit ID: 609aead9804a8f31fa9b3dbc7e52105aec487f31