Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Whole genome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_wgs.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f
	Cell Ranger ARC Count Gene Expression + ATAC Cell Ranger ARC Count Gene Expression + ATAC ============================================	https://github.com/datirium/workflows.git Path: workflows/cellranger-arc-count.cwl Branch/Commit ID: 9e3c3e65c19873cd1ed3cf7cc3b94ebc75ae0cc5
	tt_univec_wnode.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: 7cee09fb3e33c851e4e1dfc965c558b82290a785
	umi per-lane alignment subworkflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f
	running cellranger mkfastq and count	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f
	assemble.cwl Assemble a set of reads using SKESA	https://github.com/ncbi/pgap.git Path: assemble.cwl Branch/Commit ID: b38b0070edf910984f29a4a495b5dfa525b8b305
	strelka workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f
	align_merge_sas	https://github.com/ncbi/pgap.git Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: b38b0070edf910984f29a4a495b5dfa525b8b305
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f
	scRNA-seq pipeline using Salmon and Alevin	https://github.com/hubmapconsortium/salmon-rnaseq.git Path: pipeline.cwl Branch/Commit ID: 9225fa2a3cda3572b00847329ff552071153cfc2