Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
exome alignment with qc, no bqsr, no verify_bam_id
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_exome_mouse.cwl Branch/Commit ID: 3042812447d9e8889c6118986490e9c9b9b13223 |
|
|
|
Per-chromosome pindel
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 60d8a9e6c5f571ec9b37f10290a1f4613013f3e1 |
|
|
|
bact_get_kmer_reference
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: ddd1e2c08590d809c5cf325e32d596861878e6f8 |
|
|
|
trim-chipseq-pe.cwl
Runs ChIP-Seq BioWardrobe basic analysis with paired-end input data files. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-chipseq-pe.cwl Branch/Commit ID: b25b17651171f32005e9d879a9a049382f044baf |
|
|
|
bacterial_screening.cwl
|
https://github.com/ncbi/pgap.git
Path: vecscreen/bacterial_screening.cwl Branch/Commit ID: 68311dd5328bf6b782a370a0253b41062a3359a3 |
|
|
|
result_chunker.cwl
|
https://github.com/kinow/pipeline-v5.git
Path: utils/result-file-chunker/result_chunker.cwl Branch/Commit ID: 337033417c49dcf4ab394aba1ec517b97637da13 |
|
|
|
checkm_wnode
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_checkm_wnode.cwl Branch/Commit ID: dd53e6d71282b0619ef7123ba2d258b30aef2dd0 |
|
|
|
Run tRNAScan
|
https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: dd53e6d71282b0619ef7123ba2d258b30aef2dd0 |
|
|
|
aws_freebayes.cwl
|
https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/variant_calling/aws_freebayes.cwl Branch/Commit ID: 3b9d07ff1dd10e323fbba33026b888b3a269136b |
|
|
|
group-isoforms-batch.cwl
Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored. |
https://github.com/Barski-lab/workflows.git
Path: tools/group-isoforms-batch.cwl Branch/Commit ID: d09a44ebc8d092ffd8370a324c9e84b37a593d38 |
