Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Varscan Workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: varscan/workflow.cwl Branch/Commit ID: e4c851d65f460e8f48ca184120044fce72cb2433 |
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mutect parallel workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: mutect/workflow.cwl Branch/Commit ID: e4c851d65f460e8f48ca184120044fce72cb2433 |
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pindel parallel workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: pindel/workflow.cwl Branch/Commit ID: e4c851d65f460e8f48ca184120044fce72cb2433 |
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Detect Docm variants
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https://github.com/genome/cancer-genomics-workflow.git
Path: docm/workflow.cwl Branch/Commit ID: e4c851d65f460e8f48ca184120044fce72cb2433 |
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strelka workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: strelka/workflow.cwl Branch/Commit ID: e4c851d65f460e8f48ca184120044fce72cb2433 |
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wgs alignment and tumor-only variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_wgs.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5 |
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FASTQ Vector Removal
This workflow clean up vectros from fastq files |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/File-formats/remove-fastq-reads-from-blast.cwl Branch/Commit ID: 92c23571bd5925c3d33678bc944a8546597cf3a3 |
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FASTQ Vector Removal
This workflow convert fastq to multiple fasta files |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/File-formats/fastq-to-splitted-fasta.cwl Branch/Commit ID: 92c23571bd5925c3d33678bc944a8546597cf3a3 |
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Single-Cell Preprocessing Pipeline
Devel version of Single-Cell Preprocessing Pipeline =================================================== |
https://github.com/datirium/workflows.git
Path: workflows/single-cell-preprocess.cwl Branch/Commit ID: 1a46cb0e8f973481fe5ae3ae6188a41622c8532e |
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transform_pack.cwl#main
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/transform_pack.cwl Branch/Commit ID: 3cb464a3a5c39cc060cd23d9c60918bc9ffb169b Packed ID: main |
