Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Functional analyis of sequences that match the 16S SSU

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/16S_taxonomic_analysis.cwl

Branch/Commit ID: 583307878ab83c5845c897f03db920ae8e1929e2
workflow graph Workflow to create a FASTA file for the tagset

https://github.com/curoverse/l7g.git

Path: cwl-version/tagset/l7g-tagset.cwl

Branch/Commit ID: cdfe9178ad4e481d2391cd2da74b82d66a61b0bb
workflow graph wf_clipseqcore_se_1barcode.cwl

https://github.com/YeoLab/eclip.git

Path: cwl/wf_clipseqcore_se_1barcode.cwl

Branch/Commit ID: c0fffc4979a92371dc0667a03e3d957bf7f77600
workflow graph wf_clipseqcore_pe_1barcode.cwl

Workflow for handling reads containing one barcode. Returns the bam file containing read2 only. Notes: runs the following steps: - demultiplex - trimfirst_file2string - trimagain_file2string - b1_trim_and_map - view_r2 - index_r2_bam - make_bigwigs

https://github.com/YeoLab/eclip.git

Path: cwl/wf_clipseqcore_pe_1barcode.cwl

Branch/Commit ID: c0fffc4979a92371dc0667a03e3d957bf7f77600
workflow graph workflow.cwl

https://github.com/uniqueg/rd_pipeline.git

Path: workflow.cwl

Branch/Commit ID: 48ca3daf0d0ab9512d5944aae7dfb50a8c41ee6c
workflow graph taxcheck.cwl

Perform taxonomic identification tasks on an input genome

https://github.com/ncbi/pgap.git

Path: taxcheck.cwl

Branch/Commit ID: f5d70f3ad365a2c017fab1c9654c88bc1caf41aa
workflow graph blast-scatter-flow-needs-work.cwl

https://github.com/betisb/inputparser.git

Path: cwl/blast-scatter-flow-needs-work.cwl

Branch/Commit ID: 68747d69e04d126f7ea679f93a291a6de244a95f
workflow graph tindaisy-merge.cwl

https://github.com/ding-lab/TinDaisy.git

Path: cwl/workflows/tindaisy-merge.cwl

Branch/Commit ID: c81058f1f039446ab10488699675a42129040ecd
workflow graph MEME motif

This workflow uses MEME suite for motif finding

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/ChIP-Seq/meme-motif.cwl

Branch/Commit ID: 793e327acc1d159ff601043ee88651fca62350dd
workflow graph alignment_novoalign_multi_readgroup.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/harmonization/alignment_novoalign_multi_readgroup.cwl

Branch/Commit ID: 7504ead048c3acd64b9b92e44d044d558cb696f2