Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	pipeline-pe.cwl ATAC-seq pipeline - reads: PE	https://github.com/Duke-GCB/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/pipeline-pe.cwl Branch/Commit ID: 8aabde14169421a7115c5cd48c4740b3a7bd818f
	chip-seq-alignment.cwl	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/ChIP-Seq/chip-seq-alignment.cwl Branch/Commit ID: 0207b0171ab142dfb85db9c39050c5b4be51dd9e
	default-dir5.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/default-dir5.cwl Branch/Commit ID: 07ebbea2bdf97955060c1dd563580b386388519b
	pipeline-se.cwl ATAC-seq pipeline - reads: SE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/pipeline-se.cwl Branch/Commit ID: 1a0dd34d59ec983d1f7ad77bff35da2f016e3134
	extract_gencoll_ids	https://github.com/ncbi/pgap.git Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: e2a6cbcc36212433d8fbc804919442787a5e2a49
	WGS QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5
	tt_blastn_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: e2a6cbcc36212433d8fbc804919442787a5e2a49
	adapter for sequence_align_and_tag Some workflow engines won't stage files in our nested structure, so parse it out here	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5
	MACE ChIP-exo peak caller workflow for single-end samples This workflow execute peak caller and QC from ChIP-exo for single-end samples using MACE	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/ChIP-exo/peak-caller-MACE-SE.cwl Branch/Commit ID: 0207b0171ab142dfb85db9c39050c5b4be51dd9e
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 3034168d652bfa930ba09af20e473a4564a8010d