Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405
	align_merge_sas	https://github.com/ncbi/pgap.git Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: a402541b8530f30eab726c160da90a23036847a1
	kmer_top_n_extract	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: a402541b8530f30eab726c160da90a23036847a1
	taxonomy_check_16S	https://github.com/ncbi/pgap.git Path: task_types/tt_taxonomy_check_16S.cwl Branch/Commit ID: 6ac47e5703d8c8cdac698de91143829b3911e9b2
	kmer_build_tree	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: a79cec2331b3e17e382e8e5040405e8dd750c639
	Merge, annotate, and generate a TSV for SVs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405
	tt_fscr_calls_pass1	https://github.com/ncbi/pgap.git Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: 4e2a295bb6c8b4982402ee80538a0cdb8ee6b6dd
	Filter single sample sv vcf from depth callers(cnvkit/cnvnator)	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405
	Running cellranger count and lineage inference	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405
	somatic_subpipeline.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_somatic/cwl/tools/somatic_subpipeline.cwl Branch/Commit ID: 837622844b24a90eda4f0589cc557f6e4ca0d975