Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	RNASelector as a CWL workflow https://doi.org/10.1007/s12275-011-1213-z	https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git Path: workflows/rna-selector.cwl Branch/Commit ID: ecf044f3a5a7589cb2238487a19f22863c2bcdb1
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405
	align_merge_sas	https://github.com/ncbi/pgap.git Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: a402541b8530f30eab726c160da90a23036847a1
	kmer_top_n_extract	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: a402541b8530f30eab726c160da90a23036847a1
	taxonomy_check_16S	https://github.com/ncbi/pgap.git Path: task_types/tt_taxonomy_check_16S.cwl Branch/Commit ID: 6ac47e5703d8c8cdac698de91143829b3911e9b2
	kmer_build_tree	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: a79cec2331b3e17e382e8e5040405e8dd750c639
	Merge, annotate, and generate a TSV for SVs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405
	tt_fscr_calls_pass1	https://github.com/ncbi/pgap.git Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: 4e2a295bb6c8b4982402ee80538a0cdb8ee6b6dd
	Filter single sample sv vcf from depth callers(cnvkit/cnvnator)	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405
	Running cellranger count and lineage inference	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405