Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405 |
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transform_pack.cwl#exome_metrics.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/transform_pack.cwl Branch/Commit ID: 3cb464a3a5c39cc060cd23d9c60918bc9ffb169b Packed ID: exome_metrics.cwl |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: a402541b8530f30eab726c160da90a23036847a1 |
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chipseq-header.cwl
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https://github.com/datirium/workflows.git
Path: metadata/chipseq-header.cwl Branch/Commit ID: 8049a781ac4aae579fbd3036fa0bf654532f15be |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf_nonhuman.cwl Branch/Commit ID: ece70ac30cd87100a70f7dc64d08fa72724e9416 |
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transform_pack.cwl#integrity.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/transform_pack.cwl Branch/Commit ID: 3cb464a3a5c39cc060cd23d9c60918bc9ffb169b Packed ID: integrity.cwl |
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Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: a402541b8530f30eab726c160da90a23036847a1 |
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transform_pack.cwl#fastq_clean_pe.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/transform_pack.cwl Branch/Commit ID: 3cb464a3a5c39cc060cd23d9c60918bc9ffb169b Packed ID: fastq_clean_pe.cwl |
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format_rrnas_from_seq_entry
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https://github.com/ncbi/pgap.git
Path: task_types/tt_format_rrnas_from_seq_entry.cwl Branch/Commit ID: 4e2a295bb6c8b4982402ee80538a0cdb8ee6b6dd |
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downsample unaligned BAM and align
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405 |
