Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph steps.cwl

https://github.com/DimitraPanou/scRNAseq-cwl.git

Path: steps.cwl

Branch/Commit ID: a0809be8a2dda2c053536f7c6fc21193f1fe78f3
workflow graph apolloServer-createOrganism-workflow.cwl

https://github.com/NAL-i5K/Organism_Onboarding.git

Path: apolloServer-createOrganism-workflow.cwl

Branch/Commit ID: aa375dcaa5ccfbb4e2aa4433d10948c641b044eb
workflow graph Running cellranger count and lineage inference

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/single_cell_rnaseq.cwl

Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
workflow graph SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination

Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs.

https://github.com/datirium/workflows.git

Path: tools/soupx-subworkflow.cwl

Branch/Commit ID: 480e99a4bb3046e0565113d9dca294e0895d3b0c
workflow graph gk-load-code-pseudos.cwl

https://github.com/vdikan/cwl-gk-thermal.git

Path: cwl/gk-load-code-pseudos.cwl

Branch/Commit ID: 02e5bf961627e54ba18c4f832f4e3f463a9adc42
workflow graph HS Metrics workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/hs_metrics.cwl

Branch/Commit ID: 788bdc99c1d5b6ee7c431c3c011eb30d385c1370
workflow graph tt_kmer_compare_wnode

Pairwise comparison

 https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_compare_wnode.cwl

Branch/Commit ID: dc6014dc7c1f160ec4ae3d5a57388a6dceaacbc5
workflow graph Detect DoCM variants

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/docm_germline.cwl

Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
workflow graph Create Genomic Collection for Bacterial Pipeline, ASN.1 input

https://github.com/ncbi/pgap.git

Path: genomic_source/wf_genomic_source_asn.cwl

Branch/Commit ID: 2801ce53744a085580a8de91cd007c45146b51e8
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: pipeline.cwl

Branch/Commit ID: 2dc339d7d922610af97fde5d6d25798d0bdd5441