Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
exome alignment with qc, no bqsr, no verify_bam_id
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_exome_mouse.cwl Branch/Commit ID: c23dc7f113ca0b0a3127a5d6c696e98d4799460c |
|
|
|
Filter Protein Seeds I; Find ProSplign Alignments I
|
https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: c28cfb9882dedd3c522160f933cff1050ae24100 |
|
|
|
bgzip and index VCF
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 0c4f4e59c265eb22aed3d2d37b173cb5430773d2 |
|
|
|
Run genomic CMsearch (5S rRNA)
|
https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: b0ee40d34d233f1611c2e2c66b6d22a3b7deec05 |
|
|
|
Execute CRISPR
|
https://github.com/ncbi/pgap.git
Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: b0ee40d34d233f1611c2e2c66b6d22a3b7deec05 |
|
|
|
count-lines13-wf.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines13-wf.cwl Branch/Commit ID: d7cd45f7072960d264962ecc5a04d7c219f65c06 |
|
|
|
qiime2 importing data
Obtaining and importing data from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step1-import-demux-paired.cwl Branch/Commit ID: e2dc95d4f12210359360d814382e7201d836dfcf Packed ID: qiime2-01-import-data-paired.cwl |
|
|
|
Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: b0ee40d34d233f1611c2e2c66b6d22a3b7deec05 |
|
|
|
fp_filter workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: 0c4f4e59c265eb22aed3d2d37b173cb5430773d2 |
|
|
|
kmer_ref_compare_wnode
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_ref_compare_wnode.cwl Branch/Commit ID: f2bd4687f06f85ea848b6f1ce04ec97f48525334 |
