Explore Workflows

https://github.com/mskcc/roslin-variant.git

Path: setup/cwl/module-1.cwl

Branch/Commit ID: 72353a747f45ffe35863c3b6c70b28a676a97643

This workflow convert fastq to multiple fasta files

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/fastq-to-splitted-fasta.cwl

Branch/Commit ID: 8902d8d5dc85ee568decc2de51f7694164f32b00

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/sec-wf-out.cwl

Branch/Commit ID: 8d8512061f2367c90aac67bcbf92af1061b4af59

Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored.

https://github.com/Barski-lab/workflows.git

Path: tools/group-isoforms-batch.cwl

Branch/Commit ID: 12edfc2207507e53c6b5bb21e50decb5535a12f7

BAM filtering

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bam_filtering.cwl

Branch/Commit ID: 94bcf49c6f22055a359336d2e593f8289f1c5e48

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/wffail.cwl

Branch/Commit ID: 8d8512061f2367c90aac67bcbf92af1061b4af59

Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs.

https://github.com/Barski-lab/workflows.git

Path: tools/soupx-subworkflow.cwl

Branch/Commit ID: 12edfc2207507e53c6b5bb21e50decb5535a12f7

Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bwa_index.cwl

Branch/Commit ID: 94bcf49c6f22055a359336d2e593f8289f1c5e48

https://github.com/inab/vre_cwl_executor.git

Path: tests/basic/data/workflows/basic_example_test.cwl

Branch/Commit ID: 3633f105235ddd09510afd3f1a6110b98e46470a

AltAnalyze ICGS ===============

https://github.com/datirium/workflows.git

Path: workflows/altanalyze-icgs.cwl

Branch/Commit ID: 60854b5d299df91e135e05d02f4be61f6a310fbc