Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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bam to trimmed fastqs and HISAT alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 0fae6bb8a15c634b054ec747e31bdfbc67954c92 |
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exome alignment and tumor-only variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/exome.cwl Branch/Commit ID: 891c996dbd23d8154ec7609a56da3de841ae124c |
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wffail.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/wffail.cwl Branch/Commit ID: f8f24046875aa90764cf54736df926363aa326d1 |
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screen out taxa
Remove sequences which align against a reference set using bowtie2. The references are preformatted (index files) |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/organism-screening.workflow.cwl Branch/Commit ID: 1b1bb901b849b32cbfc4cb58d736bb617d514319 |
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foreign_screening.cwl
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https://github.com/ncbi/pgap.git
Path: vecscreen/foreign_screening.cwl Branch/Commit ID: 6d5e27ee7c01effb14c40619df9c4f6d321a25bf |
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tt_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: 6d5e27ee7c01effb14c40619df9c4f6d321a25bf |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf_mouse.cwl Branch/Commit ID: 18600518ce6539a2e29c1707392a4c5da5687fa3 |
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qiime2 Deblur detect/correct sequence data
Option 2: Deblur from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/duke-gcb/bespin-cwl.git
Path: packed/qiime2-step2-deblur.cwl Branch/Commit ID: e2dc95d4f12210359360d814382e7201d836dfcf Packed ID: qiime2-03-deblur.cwl |
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sec-wf-out.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/sec-wf-out.cwl Branch/Commit ID: f8f24046875aa90764cf54736df926363aa326d1 |
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811.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/811.cwl Branch/Commit ID: f8f24046875aa90764cf54736df926363aa326d1 |
