Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	BwaAligner_1_0_0.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_somatic/cwl/tools/BwaAligner_1_0_0.cwl Branch/Commit ID: 5ba65e4781f03a74a845b7cd40bbf4c2ae3a9844
	GRO_run.cwl	https://github.com/JFRudzinski/CWL_example.git Path: test_workflow_notables_clean/workflow/GRO_run.cwl Branch/Commit ID: 96a8ff1c04802aad7d41befc8e942adc9ce0c048
	vardictSomaticVariantCaller_v0_1_0.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_somatic/cwl/tools/vardictSomaticVariantCaller_v0_1_0.cwl Branch/Commit ID: 5ba65e4781f03a74a845b7cd40bbf4c2ae3a9844
	downsample unaligned BAM and align	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: e8b7759826df40b8bb821b40b15aea960a4951c4
	Apply filters to VCF file	https://github.com/litd/analysis-workflows.git Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: 336f7d1af649f42543baa6be2594cd872919b5b5
	03-map-se-blacklist-removal.cwl ATAC-seq 03 mapping - reads: SE - blacklist removal	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/03-map-se-blacklist-removal.cwl Branch/Commit ID: 1a0dd34d59ec983d1f7ad77bff35da2f016e3134
	mergeAndMarkBams_4_1_3.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_somatic/cwl/tools/mergeAndMarkBams_4_1_3.cwl Branch/Commit ID: 5ba65e4781f03a74a845b7cd40bbf4c2ae3a9844
	Get Proteins	https://github.com/ncbi/pgap.git Path: wf_bacterial_prot_src.cwl Branch/Commit ID: e2a6cbcc36212433d8fbc804919442787a5e2a49
	Apply filters to VCF file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/filter_vcf_nonhuman.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5
	phase VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/phase_vcf.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5