Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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05-quantification.cwl
ChIP-seq - Quantification - samples: treatment |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/05-quantification.cwl Branch/Commit ID: master |
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cond-with-defaults.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/conditionals/cond-with-defaults.cwl Branch/Commit ID: main |
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Exome QC workflow
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https://github.com/hamid58b/cancer-genomics-workflow.git
Path: qc/workflow_exome.cwl Branch/Commit ID: master |
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vecscreen_and_filter_workflow.cwl
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https://github.com/sapojnik/av_screen_x.git
Path: progs/vecscreen_and_filter_workflow.cwl Branch/Commit ID: main |
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samtools_view_sam2bam
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: 3bb03c9b |
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trimmed_fastq
Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed) |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/trimmed_fastq.cwl Branch/Commit ID: 1.0.9 |
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Find reads with predicted coding sequences above 60 AA in length
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/orf_prediction.cwl Branch/Commit ID: 71d9c83 |
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wf_split_self_and_idr.cwl
This workflow returns the reproducible number of split peaks given a single bam file and its size-matched input pair. This workflow splits the bam file first, but does not do anything to the input. |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_split_self_and_idr.cwl Branch/Commit ID: master |
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no-inputs-wf.cwl
Workflow without inputs. |
https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/no-inputs-wf.cwl Branch/Commit ID: main |
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Salmon quantification, FASTQ -> H5AD count matrix
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https://github.com/lux563624348/WDL-HuBMAP-salmon-rnaseq.git
Path: steps/salmon-quantification.cwl Branch/Commit ID: main |
