Explore Workflows

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Graph	Name	Retrieved From	View
	tt_hmmsearch_wnode.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode.cwl Branch/Commit ID: af78bfbc7625a817a2875e87c8ee267cf46b8c57
	Detect DoCM variants	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: c23dc7f113ca0b0a3127a5d6c696e98d4799460c
	samtoolsW.cwl Author: AMBARISH KUMAR er.ambarish@gmail.com; ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using VARSCAN. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence.	https://github.com/ambarishK/bio-cwl-tools.git Path: samtoolsW.cwl Branch/Commit ID: f2dab2d4e626a2a840fa840d7b190a82d4200b21
	Add snv and indel bam-readcount files to a vcf	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: 54846feabbf008c1946db2a86d87252e0edd95b0
	Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: af78bfbc7625a817a2875e87c8ee267cf46b8c57
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 54846feabbf008c1946db2a86d87252e0edd95b0
	foreign_screening.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/foreign_screening.cwl Branch/Commit ID: af78bfbc7625a817a2875e87c8ee267cf46b8c57
	count-lines4-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines4-wf.cwl Branch/Commit ID: 7bfe73a708dbf31d037303bb5a8fed1a79984b0f
	assembly-wf-virus.cwl	https://github.com/fjrmoreews/cwl-workflow-SARS-CoV-2.git Path: Assembly/workflow/assembly-wf-virus.cwl Branch/Commit ID: e5aaf2c78c4b8769a0a675c0b87aa05fef2ca4ed
	Detect DoCM variants	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: 54846feabbf008c1946db2a86d87252e0edd95b0