Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exome alignment with qc, no bqsr, no verify_bam_id
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_exome_mouse.cwl Branch/Commit ID: 2979b565f88ceebca934611adbf3fb8cefd65a19 |
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02-trim-pe.cwl
ATAC-seq 02 trimming - reads: PE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/02-trim-pe.cwl Branch/Commit ID: 8d02684ae0ff27e641f3704686e3bc8b1979b854 |
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Detect Docm variants
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/docm_cle.cwl Branch/Commit ID: 2979b565f88ceebca934611adbf3fb8cefd65a19 |
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Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: 42c66dd24ce5026d3f717214ddb18b7b4fae93cf |
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bam to trimmed fastqs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq.cwl Branch/Commit ID: 2979b565f88ceebca934611adbf3fb8cefd65a19 |
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bacterial_kmer
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https://github.com/ncbi/pgap.git
Path: bacterial_kmer/wf_bacterial_kmer.cwl Branch/Commit ID: 5ec226c941562124032ca6861bc8d1aeabf9d91a |
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Run pindel on provided region
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 2979b565f88ceebca934611adbf3fb8cefd65a19 |
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Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: 2979b565f88ceebca934611adbf3fb8cefd65a19 |
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scatter GATK HaplotypeCaller over intervals
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 35e6b3ef71b4a2a9caba1dbd5dc424a8809bcc0a |
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01-qc-pe.cwl
ChIP-seq 01 QC - reads: PE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/01-qc-pe.cwl Branch/Commit ID: 6d9457382f0b7cc2510e148d21383261280d17ed |
